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HTPolyNet
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HTPolyNet is a command-line tool for building atomic configurations of amorphous network polymers suitable for molecular dynamics (MD) simulations.
It uses the General Amber Force Field and produces output that can be simulated 
using Gromacs.


.. toctree::
   :maxdepth: 2
   :caption: Contents:

   install
   user-guide/index
   example-tutorials/index
   references/index
   HTPolyNetPackage

Citation
========

When using HTPolyNet in published work, please cite :cite:t:`Huang2023`, along with the main GAFF paper :cite:t:`Wang2004DevelopmentField` and the two main Gromacs papers :cite:t:`Berendsen1995` and :cite:t:`Abraham2015`.


Indices and tables
==================

* :ref:`genindex`
* :ref:`modindex`
* :ref:`search`